Node 57
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	1	0	0	0	A	1
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.01	0	0.99	T	0.99
10	0	1	0	0	C	1
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0	0	1	T	1
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	0	0	1	T	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.99	0	0.01	0	A	0.99
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0.07	0	0.93	0	G	0.93
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0	0	1	T	1
31	1	0	0	0	A	1
32	0.95	0	0.05	0	A	0.95
33	0	0	1	0	G	1
34	0	1	0	0	C	1
35	1	0	0	0	A	1
36	0.06	0	0.94	0	G	0.94
37	0.05	0	0.95	0	G	0.95
38	0	0	0	1	T	1
39	0	0.01	0	0.99	T	0.99
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.01	0	0.99	T	0.99
43	0	1	0	0	C	1
44	1	0	0	0	A	1
45	0	0.67	0	0.33	C	0.67
46	1	0	0	0	A	1
47	0	0	1	0	G	1
48	0	0.9	0	0.09	C	0.9
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.67	0.21	0.06	0.06	A	0.67
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.93	0	0.06	C	0.93
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.99	0	0.01	0	A	0.99
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0	0	1	0	G	1
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	1	0	0	C	1
70	0.06	0	0.94	0	G	0.94
71	0	0	0	1	T	1
72	0.11	0	0.88	0.01	G	0.88
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0	0.87	0.01	0.12	C	0.87
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	1	0	0	C	1
82	1	0	0	0	A	1
83	1	0	0	0	A	1
84	0.01	0.15	0	0.84	T	0.84
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.96	0	0.04	C	0.96
88	0.99	0	0.01	0	A	0.99
89	0	0	0	1	T	1
90	0	1	0	0	C	1
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.94	0	0.06	C	0.94
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.97	0	0.03	C	0.97
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	0	1	0	0	C	1
101	0.01	0	0.99	0	G	0.99
102	0.02	0.53	0.45	0.01	C	0.53
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.03	0.1	0.73	0.14	G	0.73
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	0.99	0	0	C	0.99
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.02	0.01	0.95	0.02	G	0.95
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0.01	0.1	0.89	0	G	0.89
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.58	0	0.42	C	0.58
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.01	0.93	0.04	0.02	C	0.93
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0.03	0.37	0.01	0.59	T	0.59
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.98	0	0.02	C	0.98
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.12	0	0.88	0	G	0.88
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0.95	0.04	0	C	0.95
136	0	0	0	1	T	1
137	0	1	0	0	C	1
138	0	0.96	0.01	0.03	C	0.96
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.01	0	0.99	T	0.99
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.98	0.01	0.01	C	0.98
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0	0	1	0	G	1
148	0	0	1	0	G	1
149	0.99	0.01	0	0	A	0.99
150	0.89	0	0.1	0	A	0.89
151	0.99	0	0.01	0	A	0.99
152	0	0.99	0	0	C	0.99
153	0	0.99	0	0.01	C	0.99
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	0.79	0	0.21	C	0.79
157	0.99	0	0.01	0	A	0.99
158	0	0	0.99	0	G	0.99
159	0	0.79	0	0.21	C	0.79
160	1	0	0	0	A	1
161	0	1	0	0	C	1
162	0.03	0.17	0.78	0.02	G	0.78
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	1	0	0	0	A	1
167	0	1	0	0	C	1
168	0	0.96	0.01	0.02	C	0.96
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.18	0	0.82	T	0.82
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.01	0	0.99	0	G	0.99
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0.08	0	0.92	0	G	0.92
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.59	0	0.41	C	0.59
181	0	0	1	0	G	1
182	0	0	0	1	T	1
183	0	0.96	0	0.04	C	0.96
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.96	0	0.04	C	0.96
187	0.95	0.04	0	0	A	0.95
188	1	0	0	0	A	1
189	0	0.99	0	0.01	C	0.99
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	1	0	0	C	1
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.99	0	0.01	C	0.99
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.83	0	0.17	C	0.83
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.09	0	0.91	T	0.91
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.01	0	0.99	0	G	0.99
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.54	0	0.46	C	0.54
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	0.96	0	0.04	C	0.96
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0.01	0.97	0	G	0.97
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0	0	1	0	G	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.04	0.01	0.92	0.03	G	0.92
226	0	1	0	0	C	1
227	1	0	0	0	A	1
228	0	0	1	0	G	1
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	0.4	0	0.6	0	G	0.6
232	1	0	0	0	A	1
233	1	0	0	0	A	1
234	0.99	0	0	0	A	0.99
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0	0.19	0	0.81	T	0.81
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0	0	1	0	G	1
241	0	0	0	1	T	1
242	0.01	0	0	0.99	T	0.99
243	0	0.08	0	0.92	T	0.92
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.01	0.93	0.04	0.02	C	0.93
247	0.01	0.01	0.98	0	G	0.98
248	0	0.97	0	0.03	C	0.97
249	0.01	0.77	0.03	0.19	C	0.77
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.01	0	0.99	0	G	0.99
254	0.96	0.01	0.03	0	A	0.96
255	0.33	0.01	0.65	0.01	G	0.65
256	0.3	0.64	0.05	0.02	C	0.64
257	0.99	0	0.01	0	A	0.99
258	0.04	0.01	0.9	0.06	G	0.9
259	0	1	0	0	C	1
260	0	0	0	1	T	1
261	0.01	0	0.99	0	G	0.99
262	0	1	0	0	C	1
263	1	0	0	0	A	1
264	0.19	0	0.81	0	G	0.81
265	0.98	0	0.02	0	A	0.98
266	0	1	0	0	C	1
267	0.03	0.79	0.15	0.03	C	0.79
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.02	0.44	0.51	0.02	G	0.51
271	0	0	1	0	G	1
272	0.07	0.93	0	0.01	C	0.93
273	0.03	0.79	0.14	0.03	C	0.79
274	0	0	0	1	T	1
275	0	0	1	0	G	1
276	0	0.99	0	0.01	C	0.99
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.86	0	0.14	C	0.86
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	1	0	0	C	1
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.52	0	0.48	C	0.52
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.96	0	0.04	C	0.96
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.65	0	0.35	C	0.65
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.01	0.76	0.02	0.22	C	0.76
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0.97	0	0.03	0	A	0.97
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.9	0	0.1	C	0.9
304	0	0.99	0	0.01	C	0.99
305	0	0	0	1	T	1
306	0	0	1	0	G	1
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.94	0	0.06	0	A	0.94
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0.01	0.89	0.06	0.04	C	0.89
313	0.98	0	0.01	0	A	0.98
314	0	0	0	1	T	1
315	0	0.94	0	0.06	C	0.94
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0	0.06	0	0.93	T	0.93
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.98	0.01	0.01	0.01	A	0.98
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0.01	0.9	0.05	0.03	C	0.9
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.01	0	0.99	0	G	0.99
331	0.02	0.96	0	0.01	C	0.96
332	1	0	0	0	A	1
333	0	0	1	0	G	1
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.03	0.24	0.22	0.51	T	0.51
337	0	1	0	0	C	1
338	1	0	0	0	A	1
339	0	0.94	0	0.06	C	0.94
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	0.99	0	0.01	0	A	0.99
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.15	0	0.85	0	G	0.85
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.05	0	0.95	0	G	0.95
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0	0	1	0	G	1
352	0	0	1	0	G	1
353	0	0	0	1	T	1
354	0.02	0	0.97	0.01	G	0.97
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.01	0	0.99	T	0.99
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	1	0	0	C	1
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0	0.19	0	0.81	T	0.81
364	1	0	0	0	A	1
365	0.34	0.22	0	0.44	T	0.44
366	0	1	0	0	C	1
367	0.14	0.33	0.51	0.02	G	0.51
368	1	0	0	0	A	1
369	0	0.99	0	0.01	C	0.99
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	0.98	0	0.02	0	A	0.98
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0.92	0	0.08	C	0.92
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	0.99	0	0.01	C	0.99
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.98	0	0.02	C	0.98
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0	0	1	T	1
385	1	0	0	0	A	1
386	0	0	0	1	T	1
387	0	1	0	0	C	1
388	0	0	0	1	T	1
389	0	0	1	0	G	1
390	0	0.85	0	0.15	C	0.85
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.41	0	0.59	T	0.59
394	0.04	0	0.95	0.01	G	0.95
395	0	1	0	0	C	1
396	0	0.06	0.93	0	G	0.93
397	0	1	0	0	C	1
398	0	1	0	0	C	1
399	0.02	0	0.98	0	G	0.98
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.67	0.04	0.28	0.01	A	0.67
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	0.97	0	0.03	0	A	0.97
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	0.99	0	0.01	0	A	0.99
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0	0.99	0	G	0.99
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.01	0	0.99	0	G	0.99
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	0.95	0.03	0.01	C	0.95
424	0.99	0.01	0	0	A	0.99
425	0	0	1	0	G	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.02	0.76	0.19	0.03	C	0.76
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0.01	0.67	0.1	0.22	C	0.67
433	0.97	0	0.03	0	A	0.97
434	0	0	0	1	T	1
435	0	0.3	0	0.7	T	0.7
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	1	0	0	C	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0.09	0.26	0.01	0.65	T	0.65
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.85	0	0.15	C	0.85
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	1	0	0	C	1
452	0	0	0	1	T	1
453	0.05	0.26	0.58	0.11	G	0.58
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.01	0	0.99	T	0.99
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0	0	1	0	G	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGAATTCTCGATAATTTAGAACAGTTTAAGCAGGTTTATCACAGCGGACGCAAATGGCAGCGCTGCGTGGAAGCCATCAATAACATCGACAACATCCGCCCGGGCGTGGCGCACTCCATTGGCGATTCGCTCTCCTATCGCGTGGAAACCGACAGCACG---ACCGATGCGCTGTTCGTCGGCAACCGCCGCTACTTTGAGGTGCACTACTACCTGCAGGGGCAGCAGAAAATTGAGTTTGCCGCCAAAGAGCAGCTGCAGACCGTGGCCTGCTACCGCGACGAAACCGACCGCGAATACCTGAAAGGCATC---GGTGAAACCGTGCAGGTTCACGAAGGGCAGATGGTGATTTGCGATATCGACGAAGCCTACCGCTTTATCTGCGATGCGCCGGTA------AAAAAAGTGGTGCTCAGAGTCACCATTGAAGACGGTTACTTCCTGAATAAGTAA

The most probable DNA sequence without gaps is:
ATGAGAATTCTCGATAATTTAGAACAGTTTAAGCAGGTTTATCACAGCGGACGCAAATGGCAGCGCTGCGTGGAAGCCATCAATAACATCGACAACATCCGCCCGGGCGTGGCGCACTCCATTGGCGATTCGCTCTCCTATCGCGTGGAAACCGACAGCACGACCGATGCGCTGTTCGTCGGCAACCGCCGCTACTTTGAGGTGCACTACTACCTGCAGGGGCAGCAGAAAATTGAGTTTGCCGCCAAAGAGCAGCTGCAGACCGTGGCCTGCTACCGCGACGAAACCGACCGCGAATACCTGAAAGGCATCGGTGAAACCGTGCAGGTTCACGAAGGGCAGATGGTGATTTGCGATATCGACGAAGCCTACCGCTTTATCTGCGATGCGCCGGTAAAAAAAGTGGTGCTCAGAGTCACCATTGAAGACGGTTACTTCCTGAATAAGTAA

The accuracy score for that sequence is 0.963288888888889

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.56827120532677e-09.
The natural log of that probability is -19.7800328471441.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	1	A	0	9999	
I	1	A	0	9999	
L	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	0.95	R	0.05	19	
Q	1	A	0	9999	
V	0.95	I	0.05	19	
Y	1	A	0	9999	
H	1	A	0	9999	
S	0.99	A	0	9999	
G	1	A	0	9999	
R	0.99	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.94	M	0.0528	17.8030303030303	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.99	K	0.01	99	
N	1	A	0	9999	
I	0.99	V	0.01	99	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
R	0.9999	H	0.0054	185.166666666667	
P	1	A	0	9999	
G	0.99	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	0.99	M	0.01	99	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	0.99	A	0	9999	
S	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
E	0.9801	A	0.0099	99	
T	0.9801	A	0.0099	99	
D	1	A	0	9999	
S	0.9801	G	0.0099	99	
T	1	A	0	9999	
	0	-	0	0
T	0.99	A	0	9999	
D	1	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	1	A	0	9999	
V	1	A	0	9999	
G	1	A	0	9999	
N	0.95	H	0.04	23.75	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
Q	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
Q	1	A	0	9999	
K	0.99	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
F	0.99	Y	0.01	99	
A	1	R	0	9999	
A	0.9506	V	0.0294	32.3333333333333	
K	1	A	0	9999	
E	0.931392	G	0.0297	31.36	
Q	0.595584	K	0.27918	2.13333333333333	
L	1	A	0	9999	
Q	1	A	0	9999	
T	0.98	A	0.02	49	
V	0.99	A	0	9999	
A	0.9207	D	0.0574	16.0400696864112	
C	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1.01	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
G	1	A	0	9999	
I	0.98	V	0.01	98	
	0	-	0	0
G	0.99	A	0	9999	
E	0.99	D	0.02	49.5	
T	0.99	A	0	9999	
V	1	A	0	9999	
Q	0.96	K	0.02	48	
V	1	A	0	9999	
H	1	A	0	9999	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	1	A	0	9999	
V	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	1	A	0	9999	
I	0.44	N	0.34	1.29411764705882	Unreliable
D	0.51	H	0.33	1.54545454545455	
E	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	1	A	0	9999	
A	0.9405	T	0.0396	23.75	
P	1	A	0	9999	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
K	1	A	0	9999	
K	1	A	0	9999	
V	0.99	A	0	9999	
V	1	A	0	9999	
L	0.99	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	0.97	V	0.03	32.3333333333333	
E	1	A	0	9999	
D	1	A	0	9999	
G	1.01	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	1	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEQFKQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDST-TDALFVGNRRYFEVHYYLQGQQKIEFAAKEQLQTVACYRDETDREYLKGI-GETVQVHEGQMVICDIDEAYRFICDAPV--KKVVLRVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEQFKQVYHSGRKWQRCVEAINNIDNIRPGVAHSIGDSLSYRVETDSTTDALFVGNRRYFEVHYYLQGQQKIEFAAKEQLQTVACYRDETDREYLKGIGETVQVHEGQMVICDIDEAYRFICDAPVKKVVLRVTIEDGYFLNKX

The accuracy score for that sequence is 0.985126506666667

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.0603865914499248
The natural log of that probability is -2.80698819454827.

